PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.006G139400.1
Common NamePHAVU_006G139400g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family NF-YB
Protein Properties Length: 181aa    MW: 19393.7 Da    PI: 6.512
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.006G139400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB186.81.5e-5825120297
               NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyre 92 
                         reqdrflPianvsrimkk+lPanakisk+aketvqecvsefisf+t+easdkcq+ekrktingddllwa++tlGfe+yveplk+yl+kyre
  Phvul.006G139400.1  25 REQDRFLPIANVSRIMKKALPANAKISKEAKETVQECVSEFISFITGEASDKCQKEKRKTINGDDLLWAMTTLGFEEYVEPLKIYLHKYRE 115
                         89***************************************************************************************** PP

               NF-YB  93 legek 97 
                         +egek
  Phvul.006G139400.1 116 MEGEK 120
                         ***97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.103.4E-5522127IPR009072Histone-fold
SuperFamilySSF471132.33E-4127126IPR009072Histone-fold
PfamPF008083.8E-283094IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006152.3E-215876No hitNo description
PROSITE patternPS0068506177IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006152.3E-217795No hitNo description
PRINTSPR006152.3E-2196114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MAESDNDSGG QAGNTNGGNE FSGCREQDRF LPIANVSRIM KKALPANAKI SKEAKETVQE  60
CVSEFISFIT GEASDKCQKE KRKTINGDDL LWAMTTLGFE EYVEPLKIYL HKYREMEGEK  120
TAIMGRPLGG GGAGDQRDEA YGHAHGHGGM VPNSMMVMMG HQGHVYGSGS AGSASSARTR  180
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B6e-4925115292Transcription factor HapC (Eurofung)
4g92_B6e-4925115292Transcription factor HapC (Eurofung)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007147615.11e-133hypothetical protein PHAVU_006G139400g
SwissprotO233102e-72NFYB3_ARATH; Nuclear transcription factor Y subunit B-3
TrEMBLV7BNN51e-133V7BNN5_PHAVU; Uncharacterized protein
STRINGGLYMA15G12570.18e-95(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59134150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14540.14e-73nuclear factor Y, subunit B3